Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Genes Targeted by hsa-mir-140-3p in RCCC Renal Boer Cluster 0 Table contains all genes in the RCCC Renal Boer cluster number 0. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-140-3p 29887 SNX10 sorting nexin 10 [Source:HGNC Symbol;Acc:14974] zzz999 2202 EFEMP1 EGF containing fibulin-like extracellular matrix protein 1 [Source:HGNC Symbol;Acc:3218] T 9444 QKI quaking homolog, KH domain RNA binding (mouse) [Source:HGNC Symbol;Acc:21100] P T 10336 PCGF3 polycomb group ring finger 3 [Source:HGNC Symbol;Acc:10066] zzz999 84141 FAM176A family with sequence similarity 176, member A [Source:HGNC Symbol;Acc:25816] T 8731 RNMT RNA (guanine-7-) methyltransferase [Source:HGNC Symbol;Acc:10075] T 4233 MET met proto-oncogene (hepatocyte growth factor receptor) [Source:HGNC Symbol;Acc:7029] zzz999 199 AIF1 allograft inflammatory factor 1 [Source:HGNC Symbol;Acc:352] zzz999 55863 TMEM126B transmembrane protein 126B [Source:HGNC Symbol;Acc:30883] zzz999 11321 GPN1 GPN-loop GTPase 1 [Source:HGNC Symbol;Acc:17030] zzz999 54861 SNRK SNF related kinase [Source:HGNC Symbol;Acc:30598] T 2009 EML1 echinoderm microtubule associated protein like 1 [Source:HGNC Symbol;Acc:3330] zzz999 10988 METAP2 methionyl aminopeptidase 2 [Source:HGNC Symbol;Acc:16672] P T 821 CANX calnexin [Source:HGNC Symbol;Acc:1473] P T 8935 SKAP2 src kinase associated phosphoprotein 2 [Source:HGNC Symbol;Acc:15687] T 55769 ZNF83 zinc finger protein 83 [Source:HGNC Symbol;Acc:13158] zzz999 1716 DGUOK deoxyguanosine kinase [Source:HGNC Symbol;Acc:2858] zzz999 4925 NUCB2 nucleobindin 2 [Source:HGNC Symbol;Acc:8044] zzz999 22868 FASTKD2 FAST kinase domains 2 [Source:HGNC Symbol;Acc:29160] zzz999 1611 DAP death-associated protein [Source:HGNC Symbol;Acc:2672] zzz999 5093 PCBP1 poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:8647] zzz999 1783 DYNC1LI2 dynein, cytoplasmic 1, light intermediate chain 2 [Source:HGNC Symbol;Acc:2966] T 5298 PI4KB phosphatidylinositol 4-kinase, catalytic, beta [Source:HGNC Symbol;Acc:8984] P T 81559 TRIM11 tripartite motif containing 11 [Source:HGNC Symbol;Acc:16281] T 54407 SLC38A2 solute carrier family 38, member 2 [Source:HGNC Symbol;Acc:13448] T 22906 TRAK1 trafficking protein, kinesin binding 1 [Source:HGNC Symbol;Acc:29947] T 196051 PPAPDC1A phosphatidic acid phosphatase type 2 domain containing 1A [Source:HGNC Symbol;Acc:23531] zzz999 8287 USP9Y ubiquitin specific peptidase 9, Y-linked [Source:HGNC Symbol;Acc:12633] zzz999 1810 DR1 down-regulator of transcription 1, TBP-binding (negative cofactor 2) [Source:HGNC Symbol;Acc:3017] zzz999 51643 TMBIM4 transmembrane BAX inhibitor motif containing 4 [Source:HGNC Symbol;Acc:24257] zzz999 79070 KDELC1 KDEL (Lys-Asp-Glu-Leu) containing 1 [Source:HGNC Symbol;Acc:19350] zzz999 7045 TGFBI transforming growth factor, beta-induced, 68kDa [Source:HGNC Symbol;Acc:11771] zzz999 5270 SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 [Source:HGNC Symbol;Acc:8951] zzz999 548645 DNAJC25 DnaJ (Hsp40) homolog, subfamily C , member 25 [Source:HGNC Symbol;Acc:34187] zzz999 9958 USP15 ubiquitin specific peptidase 15 [Source:HGNC Symbol;Acc:12613] T 963 CD53 CD53 molecule [Source:HGNC Symbol;Acc:1686] T 7979 SHFM1 split hand/foot malformation (ectrodactyly) type 1 [Source:HGNC Symbol;Acc:10845] zzz999 7764 ZNF217 zinc finger protein 217 [Source:HGNC Symbol;Acc:13009] zzz999 23608 MKRN1 makorin ring finger protein 1 [Source:HGNC Symbol;Acc:7112] P T 51727 CMPK1 cytidine monophosphate (UMP-CMP) kinase 1, cytosolic [Source:HGNC Symbol;Acc:18170] zzz999 2923 PDIA3 protein disulfide isomerase family A, member 3 [Source:HGNC Symbol;Acc:4606] zzz999 84320 ACBD6 acyl-CoA binding domain containing 6 [Source:HGNC Symbol;Acc:23339] zzz999 2958 GTF2A2 general transcription factor IIA, 2, 12kDa [Source:HGNC Symbol;Acc:4647] zzz999 64231 MS4A6A membrane-spanning 4-domains, subfamily A, member 6A [Source:HGNC Symbol;Acc:13375] zzz999 10959 TMED2 transmembrane emp24 domain trafficking protein 2 [Source:HGNC Symbol;Acc:16996] zzz999 7187 TRAF3 TNF receptor-associated factor 3 [Source:HGNC Symbol;Acc:12033] zzz999 55125 CEP192 centrosomal protein 192kDa [Source:HGNC Symbol;Acc:25515] T 9906 SLC35E2 solute carrier family 35, member E2 [Source:HGNC Symbol;Acc:20863] zzz999 5524 PPP2R4 protein phosphatase 2A activator, regulatory subunit 4 [Source:HGNC Symbol;Acc:9308] zzz999 116150 NUS1 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:21042] zzz999 7884 SLBP stem-loop binding protein [Source:HGNC Symbol;Acc:10904] zzz999 79365 BHLHE41 basic helix-loop-helix family, member e41 [Source:HGNC Symbol;Acc:16617] zzz999 2091 FBL fibrillarin [Source:HGNC Symbol;Acc:3599] zzz999 4082 MARCKS myristoylated alanine-rich protein kinase C substrate [Source:HGNC Symbol;Acc:6759] P T 7444 VRK2 vaccinia related kinase 2 [Source:HGNC Symbol;Acc:12719] zzz999 689 BTF3 basic transcription factor 3 [Source:HGNC Symbol;Acc:1125] zzz999 11022 TDRKH tudor and KH domain containing [Source:HGNC Symbol;Acc:11713] zzz999 253782 LASS6 LAG1 homolog, ceramide synthase 6 [Source:HGNC Symbol;Acc:23826] T 10550 ARL6IP5 ADP-ribosylation-like factor 6 interacting protein 5 [Source:HGNC Symbol;Acc:16937] zzz999 116151 C20orf108 chromosome 20 open reading frame 108 [Source:HGNC Symbol;Acc:16102] zzz999 54918 CMTM6 CKLF-like MARVEL transmembrane domain containing 6 [Source:HGNC Symbol;Acc:19177] zzz999 92912 UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:19248] zzz999 55179 FAIM Fas apoptotic inhibitory molecule [Source:HGNC Symbol;Acc:18703] P T 4012 LNPEP leucyl/cystinyl aminopeptidase [Source:HGNC Symbol;Acc:6656] T 10575 CCT4 chaperonin containing TCP1, subunit 4 (delta) [Source:HGNC Symbol;Acc:1617] zzz999 4236 MFAP1 microfibrillar-associated protein 1 [Source:HGNC Symbol;Acc:7032] zzz999 9601 PDIA4 protein disulfide isomerase family A, member 4 [Source:HGNC Symbol;Acc:30167] zzz999 23557 SNAPIN SNAP-associated protein [Source:HGNC Symbol;Acc:17145] zzz999 11010 GLIPR1 GLI pathogenesis-related 1 [Source:HGNC Symbol;Acc:17001] zzz999 6478 SIAH2 seven in absentia homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:10858] zzz999 9352 TXNL1 thioredoxin-like 1 [Source:HGNC Symbol;Acc:12436] zzz999 29110 TBK1 TANK-binding kinase 1 [Source:HGNC Symbol;Acc:11584] zzz999 51026 GOLT1B golgi transport 1B [Source:HGNC Symbol;Acc:20175] P T 11041 B3GNT1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1 [Source:HGNC Symbol;Acc:15685] P T 57561 ARRDC3 arrestin domain containing 3 [Source:HGNC Symbol;Acc:29263] zzz999 29969 MDFIC MyoD family inhibitor domain containing [Source:HGNC Symbol;Acc:28870] T 51290 ERGIC2 ERGIC and golgi 2 [Source:HGNC Symbol;Acc:30208] zzz999 5033 P4HA1 prolyl 4-hydroxylase, alpha polypeptide I [Source:HGNC Symbol;Acc:8546] P T 26353 HSPB8 heat shock 22kDa protein 8 [Source:HGNC Symbol;Acc:30171] zzz999 57162 PELI1 pellino homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:8827] P T 6319 SCD stearoyl-CoA desaturase (delta-9-desaturase) [Source:HGNC Symbol;Acc:10571] zzz999 6157 RPL27A ribosomal protein L27a [Source:HGNC Symbol;Acc:10329] zzz999 27236 ARFIP1 ADP-ribosylation factor interacting protein 1 [Source:HGNC Symbol;Acc:21496] zzz999 55776 C6orf64 chromosome 6 open reading frame 64 [Source:HGNC Symbol;Acc:21025] zzz999 27032 ATP2C1 ATPase, Ca++ transporting, type 2C, member 1 [Source:HGNC Symbol;Acc:13211] zzz999 5925 RB1 retinoblastoma 1 [Source:HGNC Symbol;Acc:9884] zzz999 6147 RPL23A ribosomal protein L23a [Source:HGNC Symbol;Acc:10317] zzz999 25778 DSTYK dual serine/threonine and tyrosine protein kinase [Source:HGNC Symbol;Acc:29043] T

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